Intraspecific variation reshapes coral assemblages under elevated temperature and acidity.

Insights into assemblages that can persist in extreme environments are still emerging. Ocean warming and acidification select against species with low physiological tolerance (trait-based 'filtering'). However, intraspecific trait variation can promote species adaptation and persistence, with potentially large effects on assemblage structure. By sampling nine coral traits (four morphological, four tissue and one skeletal) along an offshore-inshore gradient in temperature and pH, we show that distantly related coral species undergo consistent intraspecific changes as they cross into warm, acidic environments. Intraspecific variation and species turnover each favoured colonies with greater tissue biomass, higher symbiont densities and reduced skeletal investments, indicating strong filtering on colony physiology within and across species. Physiological tissue traits were highly variable within species and were independent of morphology, enabling morphologically diverse species to cross into sites of elevated temperature and acidity. Widespread intraspecific change can therefore counter the loss of biodiversity and morphological structure across a steep environmental gradient.

Occurrence and accumulation of heavy metals in algal turf particulates and sediments on coral reefs.

Algal turfs form a critical interface on coral reefs that interacts with several key ecosystem processes. While we know these turfs have a remarkable propensity to accumulate sediments, which can have a range of ecosystem impacts, their role as sinks for heavy metals remains largely unexamined. Here we quantified the concentration of 15 metals in algal turf sediments from Lizard Island and Orpheus Island on the Great Barrier Reef, and specifically explored how the loads of arsenic, cobalt, iron and lead were related to turf length. Metal composition differed markedly between the two islands, with the composition at Orpheus Island suggesting closer links to terrestrial sediment sources. Furthermore, metal loads increased significantly with turf length, suggesting that longer turfs can accumulate these pollutants on reefs. Given that algal turfs are a crucial component of herbivorous/detritivorous trophic pathways, this could represent a key juncture at which these metals enter food chains.

Farming damselfishes shape algal turf sediment dynamics on coral reefs.

Farming damselfishes are well known for shaping benthic communities on reefs, in terms of both cultivating algae and increasing productivity. However, their capacity to shape relationships between algal turfs, detritus and sediments remains largely unknown, despite the importance of such relationships on reefs. We therefore examined the relationships between sediment loads and both algal turf length and detritus levels, inside and outside farming damselfish territories, at two reefs on the Great Barrier Reef. We found that, while sediment loads are tightly coupled with algal turfs outside territories, the nature of this coupling was fundamentally different inside damselfish territories, with significantly longer algal turfs and higher detritus levels prevailing, irrespective of sediment loads. These modified algal turf-sediment relationships may be a key factor in explaining, a) the significantly higher productivity levels reported from within farming damselfish territories and b) the ability of farming damselfishes to persist in high-sediment locations.

A geometric basis for surface habitat complexity and biodiversity.

Structurally complex habitats tend to contain more species and higher total abundances than simple habitats. This ecological paradigm is grounded in first principles: species richness scales with area, and surface area and niche density increase with three-dimensional complexity. Here we present a geometric basis for surface habitats that unifies ecosystems and spatial scales. The theory is framed by fundamental geometric constraints between three structure descriptors-surface height, rugosity and fractal dimension-and explains 98% of surface variation in a structurally complex test system: coral reefs. Then, we show how coral biodiversity metrics (species richness, total abundance and probability of interspecific encounter) vary over the theoretical structure descriptor plane, demonstrating the value of the theory for predicting the consequences of natural and human modifications of surface structure.

Global warming impairs stock-recruitment dynamics of corals.

Changes in disturbance regimes due to climate change are increasingly challenging the capacity of ecosystems to absorb recurrent shocks and reassemble afterwards, escalating the risk of widespread ecological collapse of current ecosystems and the emergence of novel assemblages1-3. In marine systems, the production of larvae and recruitment of functionally important species are fundamental processes for rebuilding depleted adult populations, maintaining resilience and avoiding regime shifts in the face of rising environmental pressures4,5. Here we document a regional-scale shift in stock-recruitment relationships of corals along the Great Barrier Reef-the world's largest coral reef system-following unprecedented back-to-back mass bleaching events caused by global warming. As a consequence of mass mortality of adult brood stock in 2016 and 2017 owing to heat stress6, the amount of larval recruitment declined in 2018 by 89% compared to historical levels. For the first time, brooding pocilloporids replaced spawning acroporids as the dominant taxon in the depleted recruitment pool. The collapse in stock-recruitment relationships indicates that the low resistance of adult brood stocks to repeated episodes of coral bleaching is inexorably tied to an impaired capacity for recovery, which highlights the multifaceted processes that underlie the global decline of coral reefs. The extent to which the Great Barrier Reef will be able to recover from the collapse in stock-recruitment relationships remains uncertain, given the projected increased frequency of extreme climate events over the next two decades7.

Neighbor Diversity Regulates the Productivity of Coral Assemblages.

Sustaining ecological functions as biodiversity changes will be a major challenge in the 21st century [1]. However, our understanding of the relationship between biodiversity and ecosystem function is still emerging on tropical coral reefs [2], where reef-building corals form highly productive assemblages [3, 4] and species respond in different ways to their neighbors [5] and their environment (e.g., water flow) [6]. Experimental coral communities were assembled to quantify the performance of coral colonies with and without neighbors and in the presence of conspecifics versus heterospecifics. Under higher flow, we identified a positive effect of coral species richness on primary productivity (gross and net photosynthesis) indicated by a 53% increase in productivity in multispecies assemblages (2-4 species) relative to monocultures. Productivity in monocultures was predicted by surface areas associated with different species morphologies. In contrast, multispecies assemblages maintained high levels of productivity even in the absence of the most productive species, reflecting non-additive effects of species richness on community functioning. Assemblage performances were regulated by positive and negative interactions between colonies, with many colonies performing better among heterospecific neighbors than in isolation (facilitation). Facilitation occurred primarily among flow-sensitive taxa with simple morphologies and did not occur under lower flow, suggesting that modifications to flow microclimates by corals generated beneficial, interspecific interactions. Our results show that competition and facilitation among neighbors may be important mechanisms regulating coral assemblage productivity in variable environments. Furthermore, shifts in the diversity and identity of neighbors can impair these interactions, with potentially widespread consequences for coral community functioning.

BioTIME: A database of biodiversity time series for the Anthropocene.

MOTIVATION: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. MAIN TYPES OF VARIABLES INCLUDED: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. SPATIAL LOCATION AND GRAIN: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2). TIME PERIOD AND GRAIN: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. MAJOR TAXA AND LEVEL OF MEASUREMENT: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates. SOFTWARE FORMAT: .csv and .SQL.

Projected near-future CO2 levels increase activity and alter defensive behaviours in the tropical squid Idiosepius pygmaeus.

Carbon dioxide (CO2) levels projected to occur in the oceans by the end of this century cause a range of behavioural effects in fish, but whether other highly active marine organisms, such as cephalopods, are similarly affected is unknown. We tested the effects of projected future CO2 levels (626 and 956 µatm) on the behaviour of male two-toned pygmy squid, Idiosepius pygmaeus. Exposure to elevated CO2 increased the number of active individuals by 19-25% and increased movement (number of line-crosses) by nearly 3 times compared to squid at present-day CO2. Squid vigilance and defensive behaviours were also altered by elevated CO2 with >80% of individuals choosing jet escape responses over defensive arm postures in response to a visual startle stimulus, compared with 50% choosing jet escape responses at control CO2. In addition, more escape responses were chosen over threat behaviours in body pattern displays at elevated CO2 and individuals were more than twice as likely to use ink as a defence strategy at 956 µatm CO2, compared with controls. Increased activity could lead to adverse effects on energy budgets as well as increasing visibility to predators. A tendency to respond to a stimulus with escape behaviours could increase survival, but may also be energetically costly and could potentially lead to more chases by predators compared with individuals that use defensive postures. These results demonstrate that projected future ocean acidification affects the behaviours of a tropical squid species.